(1) is this workflow likely to mess anything up? I know this is nonstandard usage and perhaps this will get me into trouble. This seems to work – both EF and Bibdesk link to the same file now.
Opened EF, which imported the file, then used EF to move the record to the Papers folder. Then dragged the PDF from ~/Documents/myeflibrary/Files/Papers to ~/Documents/myeflibrary/To Import (myeflibrary). Bibdesk knew that the files moved, EF works great, and it looks like this worked to bring in my existing linked files.īut what about new files? I set Bibdesk to autofile to ~/Documents/myeflibrary/Files/Papers and did the following:ĭragged the new PDF to the Bibdesk citation to link it, selected “AutoFile Linked Item” in Bibdesk to rename it and move it. I then closed EF, deleted ~/Documents/myeflibrary/Files/Papers and moved ~/Documents/Papers to replace it. I imported the ~/Documents/Papers using “Import File(s)…”, which created an EagleFiler folder named “Papers” and a record for each PDF. Now I’m trying to figure out a way to get EagleFiler and Bibdesk to work together. When I started this setup, I had Bibdesk autofile into ~/Documents/Papers (some arbitrary location).
#IMPORT PDF DATA INTO BIBDESK DOWNLOAD#
I particularly like this, because a lot of the files I download have nonsensical filenames, and this process will automatically rename the file to AuthornameYear.pdf (I know, I’m lazy). Overall a very handy solution for integrating BibDesk with Word.Bibdesk has a cool feature where you can link a PDF to a particular citation, then choose “AutoFile” to have the program automatically rename it and file it where you want. And it lets me do away with EndNote (unless a collaborator decides to insert an EndNote formatted bibliography!) It’s certainly not a point and click solution – but it does let me use BibDesk with Word for those times that I need to use it. It uses a BibDesk template file to format the bibliography – so if you need a differently formatted reference list you have to understand the somewhat arcane template language that BibDesk uses. It’s certainly not “cite while you write” – but that doesn’t bother me, coming form the LaTeX world. If you delete an in-text citation, a reformat will remove it from the bibliography and so on. However, Derick Fay on the BibDesk mailing list pointed out BibFuse, which is a set of AppleScript‘s that allow you to drag citations from a BibDesk window into Word and then format them all at one go (with appropriate numbering). This was a pain since I had to make sure that I kept everything in sync (and the EndNote UI sucks!). As a result I still have to use that monstrosity called MS Word. The only problem is that I haven’t been to persuade all my collaborators to use LaTeX. It has built in search capabilities for a variety of databases (PubMed, Library of Congress, SciFinder), support tags, PDF storage and indexing and overall made my life much easier. It’s oriented towards BibTeX and LaTeX but easily exports to RIS, EndNote XML, RTF, HTML and RSS. This is a very nice GUI tool for managing references, with very responsive developers.
#IMPORT PDF DATA INTO BIBDESK MAC#
See here and here for comparisons between various systems.īeing a Mac user I chose to work with BibDesk. There are many such systems, both Open Source ( JabRef, pybibliographer) and commercial (EndNote, RefWorks etc). This calls for a bibliographic data management system. I’d like to pull references from PubMed or SciFinder. However, dealing with bibliographies involves more than just choosing the right reference from a list. Since I work mainly in Emacs, coupled with AucTeX it makes for a very comfortable writing environment. This is a widely used plain text format for bibliographies. While it gives me beautifully typeset documents, it doesn’t handle bibliographic data management. Since writing papers is pretty much a way of life for an academic, I like to have tools that let me concentrate on the content, yet make beautiful documents with minimal effort on my part.
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